You are alot younger than I imagined.
The 33mm size that I referred to is the exhaust pipe dia. about 18mm (as far as internal jaws on vernier will fit) down the inside of exhaust pipe.
And the 34.8mm to 35.8mm is measured on the head exhaust ports.
So Toyota does what Pipemax is suggesting. They make the port larger than it needs to be and then taper the headpipe down smaller than the exhaust port.
I've got to give them some credit on the OE exhaust system though. The lengths that are important are the same as what Pipemax calculates. The length of the manifolds, catalytic converters, and pipe to the "Y" are around 60" which is what Pipemax calculated. The entire exhaust length, from manifolds to mufflers and tail pipes, is close to the 164" Pipemax calculated. The lengths correspond to the harmonics of the system.
I've seen this correlation on a motorcycle exhaust system too. The factory lengths were correct, the diameters were a little too small and the transitions not as smooth as they could be but.......
I think Toyota did what they could in the tight confines and located the two cats as close as possible to the engine, they are even sized to be close to what the collector is calculated to be. A Tri-Y will be too difficult to make fit on an LS400, I'll be building a 36" long 4-1 instead, maybe merge the two pairs 2-1 just prior to the collector so it will be more like two 2-1 and then those 2-1, better step up sizing, I don't like how a 4-1 merges into a large chamber already as big as the collector needs to be.
youngcnc, 56" is about the shortest each side can be, header, muffler and tail pipe included. Or 77" or 118" long.