your parts list can change depending on your ability to fabricate.
1st: avoid using the auto trans from the 3vze. it uses a hydraulically powered transfer case, essentially being a transmission behind another transmission. this equates to taking the 250 horses the uz puts out and turning it into about 120 by the time you get to the ground. in addition to the parasitic draw you will have to control torque converter lock up manually as the lexus ecu uses a PWM ground for lock up and the a340h (3vze auto trans) uses an on/off 12v for lock up.
best cheapest easiest automatic option i found, that is if you have the original lexus trans. use a manually shifted transfer case and trans adapter from an a340f. i found mine for $350 it came out of an 88 4runner 4cyl. but they are also in the t100.
here is a link to my trans options post over at YT
http://www.yotatech.com/f161/1uzfe-transmission-options-269990/
2: you are going to want to pull the whole engine harness uncut from were it runs to the firewall on the passenger side. i used a 1990 donor so i had to also cut out the last plug for the ecu out of the body harness. your situation may be a little different.
3: remember the igniters when getting the MAF, again try to keep the wiring to the engine whole as it will save you headache later putting it all together.
4: i went with a 2 inch body lift, i assume thats what you were referring to in your parts list. anymore than that is just silly and a bit dangerous. if i could fit it in there easier i wouldnt have installed the lift at all.
5: the reason for the tundra headers is steering shaft clearance. i cut and welded another u joint into the shaft and added a pillow block bearing bolted to the inner fender well to solve this problem.
6: radiator i got from summit and had a local place put a 90 degree bend on it facing straight up so i could use the original lexus radiator hoses with a little trimming.
7: you can use the original ls400 oil filter mount with a shorter filter works fine for me. i originally tried using an off the shelf oil filter relocation kit but found the hoses to be a little problematic to say the least. i had one blow off driving down the road.
8: oil pressure sender from the 4runner if you have a qauge if just a light no problem the lexus one will do.
if you dont have access to basic fabrication tools this will turn into a pretty costly venture.
basic tools:
tape measure
sharpie marker
reciprocating saw
angle grinder
mig welder
drill
assorted blades
cut off and grinding wheels
drill bits
socket and wrench sets
engine hoisting device
BFH
and a buddy is always helpful
i did my whole swap by myself and at times it was a huge pain in the a$$.
here is my build:
http://www.yotatech.com/f199/jmswltn-91-4runner-build-up-thread-3vz-4wd-auto-22r-2wd-manual-258425/