If you are comparing a stock internal 1UZ vs a stock Internal 2jz-"GTE" the internals on the 2jz-"GTE" can handle a lot more. but cost in the US is probably $250-300 for a used 1uz to $3000-3500 for a 2jz-"GTE" I keep saying "GTE because the "GE" does not have the forged connecting rods.
The weak point on the 1UZ is the rods & pistons. Not the block. although I have seen the second gen 1uz, and 3uz blocks form a crack from the main oil tube running above the crank up. I have been told this is an oil sludge issue, and keeping good clean oil in the motor stops this. I have not seen this on the early 1UZ.
THe 1UZ is a lot lighter then a 2JZ. the Heads are very similar, and this is where the power is really made.
The 2JZ is much easier to get parts for. David (lextreme) is a really good source for the 1UZ.
I had a buddy with a 94 SC300 2jz-gte single turbo 6-speed making about 530-540HP and we raced when my SC400 was a TT 1UZ 6-speed making about 510-520HP You probably couldn't find two cars more closely matched and a better way to compare the 2jz to the 1UZ.
He was very upset by how much the 1UZ would pull on his SC300
He was sure it was a tuning issue, and took it back to the tuning shop. They drove the car, dyno tuned it again, and confirmed that the car was just like it should be.
I later drove his SC300. There is a huge difference between when the power finally comes on, and how the motor feels like its working in the L6 versus the effortless feeling you get, and the instant torque of the V8.
The power is there right away with the 1UZ. the spool comes in much quicker. Both motors made about the same HP, but the torque came in much lower, and the 1UZ made the SC much more fun to drive.
Now it took my buddy about 1 year to get his car up and running. and I've lost track of how long I've been working on my SC.
Don't get me wrong I think its awesome that 8-900+ HP is being made out of some stock 2JZ's but in my opinion if you have the time, and are willing to put equally good parts in, the 1UZ is a better motor.
Bob